Heritable differences in chemosensory ability among humans
© Newcomb et al.; licensee BioMed Central Ltd. 2012
Received: 28 February 2012
Accepted: 16 May 2012
Published: 16 May 2012
The combined senses of taste, smell and the common chemical sense merge to form what we call ‘flavor.’ People show marked differences in their ability to detect many flavors, and in this paper, we review the role of genetics underlying these differences in perception. Most of the genes identified to date encode receptors responsible for detecting tastes or odorants. We list these genes and describe their characteristics, beginning with the best-studied case, that of differences in phenylthiocarbamide (PTC) detection, encoded by variants of the bitter taste receptor gene TAS2R38. We then outline examples of genes involved in differences in sweet and umami taste, and discuss what is known about other taste qualities, including sour and salty, fat (termed pinguis), calcium, and the ‘burn’ of peppers. Although the repertoire of receptors involved in taste perception is relatively small, with 25 bitter and only a few sweet and umami receptors, the number of odorant receptors is much larger, with about 400 functional receptors and another 600 potential odorant receptors predicted to be non-functional. Despite this, to date, there are only a few cases of odorant receptor variants that encode differences in the perception of odors: receptors for androstenone (musky), isovaleric acid (cheesy), cis-3-hexen-1-ol (grassy), and the urinary metabolites of asparagus. A genome-wide study also implicates genes other than olfactory receptors for some individual differences in perception. Although there are only a small number of examples reported to date, there may be many more genetic variants in odor and taste genes yet to be discovered.
KeywordsFlavor Genetics Evolution Taste Odor Receptor Polymorphism
Why we differ in taste perception
Humans use several kinds of information to decide what to eat, and the combination of experience and sensory evaluation helps us to choose whether to consume a particular food. If the sight, smell, and taste of the food are acceptable, and we see others enjoying it, we finish chewing and swallow it. Several senses combine to create the idea of food flavor in the brain. For example, a raw chili pepper has a crisp texture, an odor, a bitter and sour taste, and a chemesthetic ‘burn.’ Each of these sensory modalities is associated with a particular group of receptors: at least three subtypes of somatosensory receptors (touch, pain, and temperature), human odor receptors, which respond either singly or in combination; [1, 2], at least five types of taste receptors (bitter, sour, sweet, salty, and umami (the savory experience associated with monosodium glutamate )), and several families of other receptors tuned to the irritating chemicals in foods, especially of herbs and spices (for example, eugenol found in cloves  or allicin found in garlic ). The information from all these receptors are transmitted to the brain, where it is processed and integrated . Experience is a potent modifier of chemosensory perception, and persistent exposure to an odorant is enough to change sensitivity .
Variants of the bitter taste receptor gene TAS2R38
Each person lives in a unique flavor world, and part of this difference lies in our genetic composition, especially within our sensory receptors . This idea is illustrated by bitter perception and bitter receptors. The bitter receptor family, TAS2, has approximately 25 receptors, found at three locations in the human genome [9, 10]. We say ‘approximately’ because bitter receptors have copy number variants , and it is currently unclear at what point a recently duplicated gene should be assigned a distinct name. This conundrum is more than a mere matter of record-keeping; the bitter receptor gene copy number is a source of biological variation and may affect perception, although this prospect has not yet been established empirically.
Genes associated with variation in taste and olfactory ability in humans
P49A, A262V, V296I
Saccharin, acesulfame K
Promoter SNPs at −1266 and 1572
Promoter SNP at -10127a
Metabolites of asparagus
In 2003, this hypothesis was tested using genetic linkage analysis. Relatives such as parents and children were assessed for their ability to taste PTC and for their pattern of DNA sharing. The genomic region most often shared by relatives with similar tasting ability was near the TAS2R38 gene , but this evidence in itself was insufficient to conclude that the TAS2R38 gene was responsible for this sensory trait. Genes encoding bitter taste receptors are physically clustered on chromosomes, and nearby DNA regions tend to be inherited together, so it was not clear whether TAS2R38 or a neighboring receptor was the responsible gene. This issue was resolved later, when individual bitter receptors were introduced into cells without taste receptors. Only those cells that contained the TAS2R38 gene responded to PTC. Moreover, cells containing naturally occurring genetic variants of the TAS2R38 gene from people who could not taste PTC were also unresponsive to this bitter compound . Together, these data showed that TAS2R38 and its variants explained the inability of some people to taste PTC at concentrations at which it is readily detectable to others.
Not all variation in the perception of PTC can be accounted for by nucleotide variants within the TAS2R38 gene. A few people do not fit this pattern; for instance, those with two copies of the non-tasting form, who report they can taste intense bitterness of PTC  (Figure 1). This may be explained by unknown variants in the TAS2R38 receptor that increase its function. It is also possible that the non-tasting form is ‘rescued’ by other bitter receptors or by other types of genes [29–31]. However rescue must be rare, because genome-wide association studies detect no additional phenotype-phenotype associations [14, 32].
Although the genetics of taste perception has been dominated by the study of PTC and its effects, evidence is gradually accumulating that the ability (or inability) to perceive other bitter tastes is heritable. For example, identical twins, who have identical genetics, are more similar in their perception of bitter compounds (other than PTC) than are fraternal twins, who are no more similar genetically than siblings . A variant in a cluster of bitter receptors on chromosome 12 is associated with quinine perception , and the bitterness of some high-intensity sweeteners is associated with alleles within a cluster of bitter receptors on chromosome 12 . These observations suggest that individual differences in bitter perception may be common, and are related to genotype.
Bitter-sensitive people can choose what they eat to avoid unpleasantness but cannot as easily avoid bitter medicines. Humans have developed strategies to improve the taste of medicine, such as adding sugar , and although such methods help, they are not perfectly effective . The problem of bitter taste in medicines may be especially troubling for people with inborn bitter sensitivity. For instance, children who are genetically more sensitive to some types of bitter molecules are also more likely to take medicines in pill rather than liquid form, perhaps because liquids are more unpleasant than pills, which are often encapsulated or coated .
Why do such differences in bitter perception exist at all? Overall, the DNA sequences of bitter receptors change faster than those of most other genes, especially within the regions of the receptor likely to bind the bitter molecules [42–44], but there are exceptions to this rule, and a few bitter receptor family members retain an identical DNA sequence over long periods . Thus genetic variation in the population reflects this evolutionary flux. What drives the change in some receptors while others are protected? It could be that there are two or three subtypes of bitter receptors, some of which are more important for taste and food intake, others for digestion, and still others for pathogen defense [46–51]. The degree of variation within the receptor might reflect the different patterns of selective pressure, changing with the labile environment or staying the same to defend against consistent threats.
Genetic differences in sweet taste detection
The sweet receptor was discovered in parts, with the last part identified in 2001 (Table 1) . This receptor consists of two proteins, T1R2 and T1R3, which form a heterodimer. Humans are attracted to sweetness, and economic and political history has been shaped by the desire to obtain sweeteners in larger and larger quantities [53, 54], but not everyone prefers the same amount of sweetness in a given food or drink. Genetic studies suggest that people vary in their liking for sweetness [8, 55, 56]. How this variation arises is poorly understood, but is likely to be due, at least in part, to allelic variation in the sweet receptor [16, 57]. The liking or dislike for high-intensity sweeteners (rather than sugars) may be due to their off-tastes; in fact, alleles in bitter receptors partially account for person-to-person differences in how these non-sugar sweeteners are perceived [11, 15, 58].
Bitter and sweet tastes share some biology in common. There are several shared downstream signaling molecules for bitter and sweet stimuli, such as gustducin . Alleles of human gustducin affect sweet perception  and may affect bitter perception but, as yet, this relationship has not been investigated. In addition, whether genetic variation in other common downstream molecules affects sweet and bitter perception is not known.
Although the role of genetic variation in sweet perception among different people is poorly understood, greater progress has been made by examining sweet perception (as inferred from preference data) in other species. All data thus far support the idea that sweet receptors are fine-tuned to an animal’s food niche. For instance, carnivorous mammals, which eat no sweet food, have an inactivated form of the sweet receptor [60, 61], and some herbivorous animals, which eat no meat, have lost their amino acid receptor . Likewise, animals that swallow their food whole have major taste loss . However, at least one mystery remains. Some primates, including humans, perceive aspartame as sweet, but aspartame is synthetic and does not occur naturally in foods, therefore it is unclear why humans have a receptor for it .
Differences in umami, sour, and salty taste detection
The three remaining classic taste qualities, umami, sour, and salty, have been less studied from a genetics perspective compared with bitter and sweet. The taste word ‘umami’ connotes the quality best exemplified by monosodium glutamate. Some people cannot taste umami [65, 66], perhaps due in part to genetic variants within its receptor, TAS1R1 (taste receptor type 1 member 1), a heterodimer composed of T1R1 and T1R3, two proteins of the TAS1R family (Table 1) [18, 67–71]. In addition to this receptor, glutamate may also be sensed by receptors similar to those that recognize glutamate in the brain .
People also differ in the perception of sour, and the results of twin studies suggest that is partly due to additive genetic effects [73, 74]. The molecular identity of receptors sensing sour taste is still uncertain, so candidate gene association studies are difficult to interpret .
Humans perceive sodium and potassium chloride as salty, and how these salts trigger a signal from taste receptor cells to the brain is not known. The sodium channel epithelial Na + channel (ENaC) and its subunits are implicated in salt perception in mice and rats , but the evidence supporting the involvement of this gene and its protein products in human salt perception is equivocal . Genetic studies of threshold for sodium chloride suggest little genetic involvement [74, 78], but studies of intensity ratings of concentrated solutions have shown a moderate degree of heritability (Knaapila et al., submitted).
‘New’ taste qualities and the chemical sense
Besides bitter, sweet, umami, sour, and salty, several new taste qualities have been identified, such as the taste of minerals, which may arise from the TRPV1 (transient receptor potential cation channel subfamily V member 1) receptor [79, 80] or the taste of calcium, arising from a heterodimer of T1R3 and the calcium-sensing receptor . Humans also perceive chemicals such as menthol (cool) or capsaicin (chili hot). These are plant defense compounds, but humans can tolerate and even like them. No heritability has been detected for these as of yet, except for the observation that genetically identical twins are alike in their preference for spicy foods . Finally, there is another class of chemicals in foods that is sensed by cells in the mouth, the fat ‘taste’ receptor(s). The idea of a special taste for fat, called pinguis, is an old concept , made new by the discovery of several membrane-bound proteins that are essential for the recognition and ingestion of fat [84–87]. Gene knockout studies in mice [88, 89] suggest that inactivating mutations in humans are likely to have an effect on human oral fat perception . Recently, variants of the putative lipid receptor CD36 have been associated with differences in oral fat perception [91, 92]. In addition, some heritable variation for the textural quality ‘astringency’ has been identified .
Why people differ in odor preferences
People vary in their ability to smell many volatile compounds. Amoore et al. identified a number of odorants for which a proportion of the population has a diminished ability to smell, including sweaty, malty, urinous, and musky-smelling compounds . More recently, Plotto et al. found that the human population could be divided into those who could and could not smell the pleasant, floral compound β-ionone . Interestingly, variation in the ability to detect the very similar compound α-ionone was much narrower, with no discernible groups of smellers and non-smellers.
Based on what we know from bitter taste, we might expect that differences in the human ability to smell certain compounds relate to variation in genes that encode odorant receptors. However, unlike the taste receptor families, the odorant receptor gene family is very large, with about 400 odor receptor genes found in clusters across the genome [96, 97]. In fact, this gene family is the largest in the human genome, as it is in all mammalian genomes characterized to date. Many mammals, including mice and dogs, have approximately 1000 odorant receptor genes and the human genes would reach a similar number if another 600 genes that are predicted to be non-functional were included [98, 99]. It may be that humans, like other primates, began losing functional odorant receptors during the development of tricolor vision when the sense of sight began to dominate . Many pseudogenes segregate within human populations; that is, some people carry at least one active version of the gene, whereas others have inactive forms that render them unable to detect the compound .
Four known cases of odorant receptor variants
Even with only 400 functional odorant receptors, humans are thought to be able to detect hundreds of thousands of different odors. Only a few receptors have been studied for the odors they can detect , and many of these receptors seem to be broadly tuned, being able to detect many different compounds, but with different affinities for different odors. To date, only four volatile compounds have been studied for genetic variation associated with differences in perception: the steroid hormone derivative androstenone (musky), isovaleric acid (cheesy), cis-3-hexen-1-ol (grassy), and metabolites of asparagus found in urine (sulfurous or cabbage-like). In most cases, the associated genetic variant(s) falls within or close to genes encoding odorant receptors (Table 1). The question of why there are so few cases of genetic associations is interesting to consider, especially given the large number of receptors present in the genome. It may simply be due to the early stage of the research in this area, or it may reflect the redundancy among receptors caused by their overlapping range of activating odors. Other explanations are the technical challenges of determining person-to-person differences in the DNA sequence of olfactory receptors, which can be very similar to one another, and are prone to duplication or deletion. Time and additional research will no doubt tell.
From a genetics perspective, PTC is the best-studied taste stimulus and there is a corresponding best-studied stimulus for olfaction. Human subjects vary considerably in their perception of the testosterone-derived steroidal odor androstenone. This compound is a pheromone in pigs, and is responsible for the negative trait known as ‘boar taint’ in bacon. Some describe androstenone as unpleasantly sweaty, whereas others think it pleasant and perfume-like, and others cannot detect it at all. Using a cell-based assay to screen 335 receptors, Keller et al. identified the odorant receptor OR7D4 as giving the strongest response to androstenone . Furthermore, OR7D4 responded only to androstenone and the related compound androstadienone, and not to 62 other odorants tested. Keller et al.  found four amino acid variants within the OR7D4 receptor that affect sensitivity to the two steroidal odors, with the two common variants (R88W and T133M) being in complete association (linkage disequilibrium; LD). LD refers to the idea that two genetic variants physically close to each other tend to be inherited together. Subjects carrying two copies of the R88/T133 OR7D4 alleles (homozygotes) had high sensitivity for the two compounds, compared with subjects carrying only one copy (heterozygotes). Furthermore, subjects who were homozygous for R88/T133 rated the odors as more intense than did subjects with the other genotypes, and the R88/T133 heterozygotes were more likely to rate androstenone as pleasant-smelling than were the R88/T133 homozygotes. These data provide evidence that variation in OR7D4 affects sensitivity and perception of androstenone and androstadienone, and this observation was recently confirmed for androstenone in an independent sample .
Menashe et al.  investigated the associations between the ability to detect four odorants (isoamyl acetate, isovaleric acid, L-carvone, and cineole) and genetic variation within 43 odorant receptor genes thought to be segregating for functional and non-functional forms. There was a significant association between the ability to detect isovaleric acid and the segregating odorant receptor pseudogene OR11H7P. People who carry two copies of the defective form of OR11H7P are less likely to be able to detect the cheesy smell of isovaleric acid.
The compound cis-3-hexen-1-ol, which smells of freshly cut grass, is a flavor compound for foods, including many fruits and vegetables, beverages such as white wine, and processed foods, where it is added to promote a fresh flavor note. Jaeger et al. used a genome-wide association approach to identify genetic variants associated with the ability to detect cis-3-hexen-1-ol, and identified a region on chromosome 6 that contains 25 odorant receptor genes . The odorant receptor OR2J3, is able to respond to cis-3-hexen-1-ol, as are two other receptors with neighboring genes, OR2W1 and OR2J2. However, OR2J3 contains the variants best associated with the ability to detect the compound. In fact, either of two amino acid substitutions within OR2J3, T113A and R226Q, impair the ability of the receptor to detect the grassy smell. When they occur together, as is typically the case, they abolish the ability of the receptor to detect cis-3-hexen-1-ol at all .
After the ingestion of asparagus, the urine can take on a distinct smell in some but not all people; either they do not produce or do not detect the odorous asparagus metabolites. A large genetic-association study conducted by a company providing direct-to-consumer genetics testing and web-based questionnaires added the ability to detect this odor as one of the 22 traits examined . Participants were genotyped at more than 500,000 genetic variation sites across their genome, and then associations were tested between these genetic variants and whether the participant had detected the odor. A significant set of associations was found within the OR2M7 gene on chromosome 1. This gene lies within a cluster of approximately 50 odorant receptors genes. Pelchat et al.  replicated the association with OR2M7 by directly determining the ability of participants to distinguish the odor . However, some of the odors detected by the OR2M7 receptor itself have been identified in cell-based assays, such as geraniol and (−)-β-citronellol , which have the smell of geraniums and citrus, respectively, making it less likely that OR2M7 might also detect the structurally unrelated sulfurous compounds typically attributed to asparagus metabolites, such as methanethiol and dimethyl sulfide. Instead, nearby receptors may be responsible.
Not all genetic variation that affects olfaction may arise from receptors. Specific genetic syndromes that affect the development of the olfactory epithelium and cortex reduce or eliminate the sense of smell , and it is possible that there may be less serious forms of these disorders that fail to rise to the level of a disease diagnosis, but nonetheless affect olfactory function. There may also be genes that contribute to hyposmia which are not associated with other symptoms or syndromes . Recently a region of the genome that is not near olfactory receptors was implicated in androstenone perception, and further characterization of this association may point to novel olfactory genes .
Beyond the receptor
Most of the known gene variations relating to perceptual differences in taste and smell are specific to a single receptor. It may be that receptor variation affects only the perception of its ligand or it may have broader effects due to brain rewiring (in response to missing input) or to the clustering of receptor variants (LD). Thus, more characterization of human perceptual differences in conjunction with genotype studies is needed. The reduced ability to detect a single compound (such as PTC) might be associated with a reduced ability to detect structurally unrelated bitter compounds or even other taste qualities. Variation in genes other than receptors may also have a broad effect on chemosensory perception; for instance, alleles of gustducin may affect both bitter and sweet perception.
Humans each live in a unique flavor world in part because of their personal pattern of sensory receptors. A prime example is the ability to taste the bitter compound PTC, which relates to taster and non-taster genetic variants for TAS2R38, the gene coding its receptor. Bitter and sweet tastes shares some biology in common; however, unlike bitter, sweet is universally liked, although people differ in how much sweetness they prefer, for reasons not yet known. The umami, sour, and salty taste qualities have been less studied from a genetics perspective, but they too show variation that relates to heritability. Other taste qualities are beginning to be recognized: the taste of calcium, the fat ‘taste’ (pinguis), and textures such as astringency, in addition to chemicals such as menthol (cool) or capsaicin (chili hot) that excite the common chemical sense. While the repertoire of receptors involved in taste perception is relatively small, with 25 bitter and a few sweet and umami receptor subunits, the number of odorant receptors is large, with 400 functional receptors and another 600 predicted to be non-functional. Odor perception also displays genetic variation, as illustrated by the four known cases of odorant receptor variants related to the perception of androstenone, isovaleric acid, cis-3-hexen-1-ol, and asparagus metabolites. Many more genes that are yet to be discovered may be involved in encoding variants in taste and especially odor detection. The tools allowing this research are now accessible and affordable, and we expect many more associations to be identified in the coming years. A goal of much of the sensory research we review here is to bring the knowledge of genetic variations in the ability to taste and smell specific compounds into the practical world of improving food choices. These studies also give a platform to explore how genotype and experience may interact, making some people more flexible and others less so in their food preferences. In due course, this knowledge may help us adapt foods to specific individuals or genetic groups.
This work was supported in part by grants from the National Institute of Health Institute of Deafness and other Communication Disorders (P30DC0011735), the New Zealand Ministry of Science and Innovation (C06X0805), and from funds from the Henry and Camille Dreyfus Foundation. From the Monell Chemical Senses Center, we gratefully acknowledge the assistance of Anna Lysenko, Liang-Dar (Daniel) Hwang, Brad Fesi, Alexis Burdick Will, Amanda McDaniel, Kirsten Mascioli, Fujiko Duke, and Rebecca James for the genotyping. Jeremy McRae, Sara Jaeger, Sarah V Lipchock, Gary L Beauchamp, and Michael G. Tordoff provided comments on this manuscript before publication. We would like to thank Wolfgang Meyerhof, Sara Jaeger, Roger Harker, Xia Li, Antti Knaapila, Joseph Brand, Marcia Levin Pelchat, Charles Wysocki, Julie A Mennella, and Scott Stein for useful discussions.
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